1. Ulrich Beez, Bernhard G. Humm, Paul Walsh: “Semantic AutoSuggest for Electronic Health Records“. In: Hamid R. Arabnia, Leonidas Deligiannidis, Quoc-Nam Tran (Eds): Proceedings of the 2015 International Conference on Computational Science and Computational Intelligence. Las Vegas, Nevada, USA, 7-9 Decemeber 2015. IEEE Conference Publishing Services 2015. ISBN 978-1-4673-9795-7/15, DOI 10.1109/CSCI.2015.85.
  2. Bernhard G. Humm, Paul Walsh: Flexible yet Efficient Management of Electronic Health Records . In: Hamid R. Arabnia, Leonidas Deligiannidis, Quoc-Nam Tran (Eds): Proceedings of the 2015 International Conference on Computational Science and Computational Intelligence. Las Vegas, Nevada, USA, 7-9 Decemeber 2015. IEEE Conference Publishing Services 2015. ISBN 978-1-4673-9795-7/15, DOI 10.1109/CSCI.2015.84.
  3. Markus Leipold : A Pipeline for Differential Gene Expression Analysis  . M.Sc. thesis Hochschule Darmstadt – University of Applied Sciences, 2016 Supervisor: Bernhard Humm.
  4. Brendan Lawlor & Paul Walsh (2015): Engineering bioinformatics building reliability performance and productivity into bioinformatics software  , Bioengineered, 6:4, 193-203, DOI: 10.1080/21655979.2015.1050162
  5. Paul Walsh, Brendan Lawlor, Brian Kelly, Timmy Manning, Timm Heuss and Markus Leopold: Rapidly Visualizing NGS Cancer Data Sets with Cloud Computing. AVI 2016 INTERNATIONAL WORKING CONFERENCE ON ADVANCED VISUAL INTERFACES
  6. Paul Walsh and Brendan Lawlor: THE DNA DATA DELUGE – A Parallel Computing Approach. PRACE Scientific and Industrial Conference 2015
  7. Brendan Lawlor and Paul Walsh: The Weekend Warrior: How to build a genomic supercomputer in your spare time using Streams and Actors in Scala. ScalCom 2016 : The 16th IEEE International Conference on Scalable Computing and Communications
  8. David Cormnican: Gene Expression Profiling of Melanoma, M.Sc. Thesis Cork Institute of Technology, Supervisor: Paul Walsh.
  9. Bernhard G Humm: Applied Artificial Intelligence – An Engineering Approach. Leanpub, Victoria, British Columbia, Canada, 2016. https://leanpub.com/AAI
  10.  Johannes Idelhauser, Ulrich Beez, Bernhard G. Humm, Paul Walsh: A Clinical Decision Support System for Personalized Medicine  . In: U. Bleimann, B. Humm, R. Loew, I. Stengel, P. Walsh (Eds): Proceedings of the 2016 European Collaborative Research Conference (CERC 2016), pp 132 – 145. Cork, Ireland, 2016. ISSN  2220 – 4164.
  11. Johannes Idelhauser: A Clinical Decision Support System for Personalised Medicine. M.Sc. thesis Hochschule Darmstadt – University of Applied Sciences, 2016 Supervisor: Bernhard Humm.
  12. Ulrich Beez: Terminology-Based Retrieval of Medical Publications. M.Sc. thesis Hochschule Darmstadt – University of Applied Sciences, 2015 Supervisor: Bernhard Humm.
  13. Tino Landmann: Evidence-Based Medical Recommendations for Personalized Medicine. M.Sc. thesis Hochschule Darmstadt – University of Applied Sciences, 2015 Supervisor: Bernhard Humm.
  14. Bernhard G. Humm, Paul Walsh: Personalized Clinical Decision Support for Cancer Care. In: Thomas Hoppe, Bernhard G. Humm, Anatol Reibold (Eds): Semantic Applications – Methodology, Technology, Corporate Use. pp. 125-143. Springer Verlag, Berlin, 2018. ISBN 978-3-662-55432-6.
  15. Matthias Coym, Bernhard G. Humm, Patrick Spitzer, Paul Walsh: A Dynamic Product Line for an Electronic Health Record Management System for Cancer Care  . In: Udo Bleimann, Bernhard Humm, Robert Loew, Stefanie Regier, Ingo Stengel, Paul Walsh (Eds): Proceedings of the Collaborative European Research Conference (CERC 2017), pp 134-141, Karlsruhe, Germany, 22-23 September 2017. ISSN: 2220-4164.
  16. Bernhard G. Humm, Fabian Lamba, Tino Landmann, Marc Steffens, Paul Walsh: Evidence-Based Medical Recommendations for Personalized Medicine  . In: Udo Bleimann, Bernhard Humm, Robert Loew, Stefanie Regier, Ingo Stengel, Paul Walsh (Eds): Proceedings of the Collaborative European Research Conference (CERC 2017), pp 147-155, Karlsruhe, Germany, 22-23 September 2017. ISSN: 2220-4164.
  17. Bernhard G. Humm, Paul Walsh: Personalised Clinical Decision Support for Cancer Care. In: Thomas Hoppe, Bernhard G. Humm, Anatol Reibold (Eds): Semantic Applications – Methodology, Technology, Corporate Use. pp. 125-143. Springer Verlag, Berlin, 2018. ISBN 978-3-662-55432-6
  18. Timm Heuss: A Framework to Support Developers in the Integration and Application of Linked and Open Data . Ph.D. thesis Plymouth University, 2016. Supervisor: Bernhard Humm
  19. Alejandro Santamaria de Lomas : Data Historization in an Electronic Health Record Management System . B.Sc.  thesis Hochschule Darmstadt – University of Applied Sciences, 2018 Supervisor: Bernhard Humm.
  20. Daniel Ebanja: Integrating Clinical Decision Support in a Product Line for Electronic Health Record Management . M.Sc.  thesis Hochschule Darmstadt – University of Applied Sciences, 2018 Supervisor: Bernhard Humm.
  21. Paul Walsh, Jennifer Lynch, Cintia Palu, Onofrio Gigliotta, Raffaele Di Fuccio:     Demonstrating Machine Learning for Cancer Diagnostics. Proceedings of Collaborative European Research Conference (CERC 2019), Darmstadt, Germany.
  22. Paul Walsh, Jennifer Lynch, Timothy Manning: Machine Learning Approaches to Melanoma Management in a Clinical Setting. Proceedings of Collaborative European Research Conference (CERC 2019), Darmstadt, Germany.
  23. Gil Alterovitz, Dennis Dean, Carole Goble, Michael R. Crusoe, Stian Soiland-Reyes, Amanda Bell, Anais Hayes, Anita Suresh, Anjan Purkayastha, Charles H. King, Dan Taylor, Elaine Johanson, Elaine E. Thompson, Eric Donaldson, Hiroki Morizono, Hsinyi Tsang, Jeet K. Vora, Jeremy Goecks, Jianchao Yao, Jonas S. Almeida, Jonathon Keeney, KanakaDurga Addepalli, Konstantinos Krampis, Krista M. Smith, Lydia Guo, Mark Walderhaug, Marco Schito, Matthew Ezewudo, Nuria Guimera, Paul Walsh, Robel Kahsay, Srikanth Gottipati, Timothy C. Rodwell, Toby Bloom, Yuching Lai, Vahan Simonyan, Raja Mazumder: Enabling precision medicine via standard communication of HTS provenance, analysis, and results. PLOS Biology journal 16/12.
  24. Michael W Bennett, Tim Manning, Brian Kelly, Noel Murphy, Paul Walsh, Tara Jane Browne, Fionnuala O’Connell: Concordance in the Cloud- A Multidisciplinary Software Tool for Breast Core Biopsy Correlation  In LABORATORY INVESTIGATION. Vol. 96. 75 VARICK ST, 9TH FLR, NEW YORK, NY 10013-1917 USA: NATURE PUBLISHING GROUP, 2016
  25. Fionnuala O’Connell, Tim Manning, Brian Kelly, Noel Murphy, Paul Walsh, Tara Jane Browne, Michael W Bennett: Pathology-Driven Cloud-Based Mutidisciplinary Team Meeting Software. Laboratory Investigation. Nature Publishing Group, Vol 96, 2016
  26. Cintia Cristina Palu , Marcelo Ribeiro-Alves, Yanxin Wu, Brendan Lawlor, Pavel V Baranov, Brian Kelly and Paul Walsh: Simplicity DiffExpress: a bespoke cloud-based interface for RNA-seq differential expression modeling and analysis              . Front. Genet. – Bioinformatics and Computational Biology
  27. Ntalaperas, A. Bouras:  A.: Utilizing High Performance Computing Techniques for efficiently anonymizing sensitive patient data , In Proceedings of the Collaborative European Research Conference (CERC 2017), p. 178-179, 2017
  28. Patrick Spitzer: A Dynamic Product Line for an Electronic Health Record Management System in Cancer Care . M.Sc.  thesis Hochschule Darmstadt – University of Applied Sciences, 2017 Supervisor: Bernhard Humm.
  29. Dimitrios Ntalaperas: An approach for anonymization of sensitive clinical and genetic data based on Data Cube Structures. In Proceedings of the Collaborative European Research Conference (CERC 2016), Cork, Ireland.